STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_4358PFAM: sulfatase; KEGG: jan:Jann_0304 hypothetical protein. (525 aa)    
Predicted Functional Partners:
Pden_4357
KEGG: jan:Jann_0303 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 0.984
Pden_4362
PFAM: glycosyl transferase, group 1; KEGG: jan:Jann_0309 glycosyl transferase, group 1.
 
  
 0.945
Pden_4359
KEGG: jan:Jann_0306 twin-arginine translocation pathway signal.
 
     0.902
Pden_4361
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_0308 binding-protein-dependent transport systems inner membrane component.
 
     0.897
Pden_4356
PFAM: cytochrome B561; KEGG: jan:Jann_0302 cytochrome b561.
 
     0.849
Pden_4360
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: jan:Jann_0307 ABC transporter related.
 
     0.759
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.