Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Pden_4364PFAM: ThiJ/PfpI domain protein; KEGG: bbr:BB2338 probable transcriptional regulator. (403 aa)    
Predicted Functional Partners:
Pden_4365
Transcriptional regulator, AraC family with amidase-like domain; PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; KEGG: mmr:Mmar10_1581 transcriptional regulator, AraC family.
 
     0.893
Pden_4363
PFAM: bifunctional deaminase-reductase domain protein; KEGG: sme:SMc04173 hypothetical protein.
 
     0.725
Pden_1332
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bpm:BURPS1710b_A0955 DarR.
  
     0.499
Pden_3347
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mlr1197 hypothetical protein.
 
    0.455
Pden_2953
PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: mes:Meso_0590 transcriptional regulator, AraC family.
  
     0.446
Pden_0668
PFAM: regulatory protein, TetR; KEGG: sit:TM1040_1583 transcriptional regulator, TetR family.
  
     0.413
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.