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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_4447PFAM: extracellular solute-binding protein, family 1; KEGG: atc:AGR_C_715 putative iron binding protein. (337 aa)    
Predicted Functional Partners:
Pden_4446
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_C_717 hypothetical protein.
 
 
 0.995
Pden_4448
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rsp:RSP_2539 ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
 
 0.965
Pden_1079
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll3625 ABC transport system permease protein.
  
 
 0.930
Pden_0309
KEGG: atc:AGR_C_4480 periplasmic iron-binding protein.
  
  
 0.916
Pden_1078
PFAM: extracellular solute-binding protein, family 1; KEGG: sit:TM1040_0544 extracellular solute-binding protein, family 1.
     
 0.906
Pden_1077
Carbohydrate ABC transporter ATP-binding protein, CUT1 family; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mlo:mll3624 ATP-binding component of transport system; TC 3.A.1.1.-.
  
 
  0.809
Pden_1733
PFAM: iron permease FTR1; KEGG: rru:Rru_A2597 iron permease FTR1.
   
  
 0.799
Pden_4444
PFAM: protein of unknown function DUF461; nuclear export factor GLE1; KEGG: sme:SMc01242 signal peptide protein.
 
     0.602
Pden_1323
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ret:RHE_CH03088 hypothetical protein.
   
    0.600
Pden_1574
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; KEGG: ret:RHE_CH03088 hypothetical protein.
   
    0.600
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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