STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Pden_4455PFAM: ANTAR domain protein; KEGG: jan:Jann_3038 response regulator receiver (CheY-like) and ANTAR domain protein. (196 aa)    
Predicted Functional Partners:
Pden_4454
KEGG: jan:Jann_3039 putative nitrate transport protein.
 
  
 0.981
Pden_4449
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: jan:Jann_3045 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.927
Pden_4451
TIGRFAM: nitrite reductase [NAD(P)H], small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rde:RD1_4167 assimilatory nitrite reductase, small subunit.
 
  
 0.910
Pden_4452
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rde:RD1_4168 assimilatory nitrite reductase, large subunit.
 
  
 0.887
Pden_4017
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: rsp:RSP_0301 ABC branched chain amino acid transporter, substrate binding protein; TC 3.A.1.4.-.
 
 
 0.672
Pden_0488
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rsp:RSP_1146 glutamine-pyruvate aminotransferase.
  
  
 0.602
Pden_0026
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: rsp:RSP_2582 hypothetical protein; TC 3.A.1.4.-.
  
 
 0.571
Pden_0052
KEGG: rsp:RSP_2275 ABC branched amino acid transporter family, periplasmic substrate-binding subunit; TC 3.A.1.4.-.
  
 
 0.571
Pden_0175
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: bja:blr1052 putative ABC transporter binding protein; TC 3.A.1.4.-.
  
 
 0.571
Pden_1717
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: rsp:RSP_3297 ABC branched-chain amino acid transporter, periplasmic binding protein; TC 3.A.1.4.-.
  
 
 0.571
Your Current Organism:
Paracoccus denitrificans
NCBI taxonomy Id: 318586
Other names: P. denitrificans PD1222, Paracoccus denitrificans PD1222
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