STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP74249.1PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_3540 TonB-dependent receptor. (817 aa)    
Predicted Functional Partners:
ABP76413.1
PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_1186 protein of unknown function DUF885.
  
     0.599
ABP77621.1
PFAM: protein of unknown function DUF885; KEGG: shm:Shewmr7_4005 protein of unknown function DUF885.
  
     0.587
ABP75095.1
PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_2621 protein of unknown function DUF885.
  
     0.573
ABP75315.1
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_2386 TonB-dependent siderophore receptor.
  
    0.547
ABP75246.1
TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
   0.535
ABP76600.1
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: she:Shewmr4_0979 TonB-dependent siderophore receptor.
  
  
 0.510
ABP75318.1
PFAM: peptidase M28; KEGG: shm:Shewmr7_2455 peptidase M28.
  
     0.508
ABP75249.1
PFAM: protein of unknown function DUF885; KEGG: she:Shewmr4_2457 protein of unknown function DUF885.
  
     0.502
ABP75467.1
PFAM: peptidase M28; KEGG: she:Shewmr4_2197 peptidase M28.
  
     0.498
ABP74407.1
PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9B, dipeptidylpeptidase IV domain protein; KEGG: shm:Shewmr7_3372 peptidase S9B, dipeptidylpeptidase IV domain protein.
 
     0.490
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.