STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP74397.1KEGG: she:Shewmr4_0638 hypothetical protein. (1223 aa)    
Predicted Functional Partners:
ABP74398.1
KEGG: shm:Shewmr7_3381 hypothetical protein.
 
    0.908
ABP74399.1
KEGG: shm:Shewmr7_3380 hypothetical protein.
 
     0.880
ABP74400.1
KEGG: son:SO4005 hypothetical protein.
 
 
 
 0.823
ABP76121.1
Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.808
ABP75563.1
KEGG: shm:Shewmr7_1896 hypothetical protein.
 
     0.716
ABP76534.1
PFAM: type IV pilus assembly PilZ; KEGG: she:Shewmr4_1044 type IV pilus assembly PilZ.
  
     0.652
ABP75506.1
KEGG: shm:Shewmr7_2233 hypothetical protein.
 
   
 0.634
ABP77015.1
KEGG: son:SO0573 hypothetical protein.
  
     0.634
ABP75878.1
KEGG: son:SO2256 hypothetical protein.
  
     0.631
ABP77030.1
KEGG: shm:Shewmr7_3474 hypothetical protein.
  
     0.611
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.