def-2 protein (Shewanella putrefaciens) - STRING interaction network

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def-2

Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (163 aa)

Predicted Functional Partners:

rplT

0.872

rplU

0.869

rpmA

0.862

rplI

0.855

tig

0.844

rpsT

0.839

rpsP

0.838

rpsU

0.836

rpsJ

0.830

rpmE

0.822

Your Current Organism:

Shewanella putrefaciens

NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
def-2	rplI	Sputcn32_1795	Sputcn32_0756	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L9P; Binds to the 23S rRNA.	0.855
def-2	rplT	Sputcn32_1795	Sputcn32_2015	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.872
def-2	rplU	Sputcn32_1795	Sputcn32_0979	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.869
def-2	rpmA	Sputcn32_1795	Sputcn32_0980	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	PFAM: ribosomal protein L27; KEGG: son:SO3651 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.862
def-2	rpmE	Sputcn32_1795	Sputcn32_0553	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	LSU ribosomal protein L31P; Binds the 23S rRNA.	0.822
def-2	rpsJ	Sputcn32_1795	Sputcn32_3760	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.830
def-2	rpsP	Sputcn32_1795	Sputcn32_1168	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	PFAM: ribosomal protein S16; KEGG: shm:Shewmr7_2920 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.838
def-2	rpsT	Sputcn32_1795	Sputcn32_1056	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.839
def-2	rpsU	Sputcn32_1795	Sputcn32_1107	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	PFAM: ribosomal protein S21; KEGG: shm:Shewmr7_2987 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.836
def-2	tig	Sputcn32_1795	Sputcn32_1489	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.	0.844
rplI	def-2	Sputcn32_0756	Sputcn32_1795	LSU ribosomal protein L9P; Binds to the 23S rRNA.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.855
rplI	rplT	Sputcn32_0756	Sputcn32_2015	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.996
rplI	rplU	Sputcn32_0756	Sputcn32_0979	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.991
rplI	rpmA	Sputcn32_0756	Sputcn32_0980	LSU ribosomal protein L9P; Binds to the 23S rRNA.	PFAM: ribosomal protein L27; KEGG: son:SO3651 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.991
rplI	rpmE	Sputcn32_0756	Sputcn32_0553	LSU ribosomal protein L9P; Binds to the 23S rRNA.	LSU ribosomal protein L31P; Binds the 23S rRNA.	0.948
rplI	rpsJ	Sputcn32_0756	Sputcn32_3760	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.991
rplI	rpsP	Sputcn32_0756	Sputcn32_1168	LSU ribosomal protein L9P; Binds to the 23S rRNA.	PFAM: ribosomal protein S16; KEGG: shm:Shewmr7_2920 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.990
rplI	rpsT	Sputcn32_0756	Sputcn32_1056	LSU ribosomal protein L9P; Binds to the 23S rRNA.	SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.	0.986
rplI	rpsU	Sputcn32_0756	Sputcn32_1107	LSU ribosomal protein L9P; Binds to the 23S rRNA.	PFAM: ribosomal protein S21; KEGG: shm:Shewmr7_2987 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.974
rplI	tig	Sputcn32_0756	Sputcn32_1489	LSU ribosomal protein L9P; Binds to the 23S rRNA.	Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.	0.969

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