STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP75692.1PFAM: outer membrane efflux protein; KEGG: sde:Sde_1958 aconitate hydratase 1. (414 aa)    
Predicted Functional Partners:
ABP75691.1
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sde:Sde_1956 hypothetical protein.
 
   0.925
ABP75690.1
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sde:Sde_1955 cation efflux system protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.887
macB
ABC transporter related; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.845
ABP73962.1
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: sde:Sde_1956 hypothetical protein.
 
   0.836
ABP77699.1
KEGG: tcx:Tcr_2096 secretion protein HlyD.
 
   0.826
ABP73961.1
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: sde:Sde_1955 cation efflux system protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.755
ABP73929.1
KEGG: pol:Bpro_2488 cointegrate resolution protein T.
  
     0.751
ABP75705.1
KEGG: psp:PSPPH_2263 cointegrate resolution protein T.
  
     0.734
ABP75694.1
KEGG: abo:ABO_1368 cation efflux system permease, putative.
 
     0.715
ABP77698.1
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: tcx:Tcr_2095 heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.710
Your Current Organism:
Shewanella putrefaciens
NCBI taxonomy Id: 319224
Other names: S. putrefaciens CN-32, Shewanella putrefaciens CN-32, Shewanella putrefaciens str. CN-32, Shewanella putrefaciens strain CN-32
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