STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Plut_1237Pentapeptide repeat family protein. (438 aa)    
Predicted Functional Partners:
Plut_1238
Conserved hypothetical protein.
       0.776
Plut_1239
Hypothetical protein.
       0.776
Plut_1240
Transcriptional regulator, putative.
       0.682
Plut_1236
Glycosyl transferase.
  
    0.569
Plut_1235
Oxidoreductase, FAD-binding protein.
       0.449
Plut_0243
WD-40 repeat-containing protein.
 
     0.445
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
   
 
 0.440
rlpA-2
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
   
 
 0.421
Plut_0484
TPR repeat.
 
  
 0.417
Plut_1241
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
       0.412
Your Current Organism:
Pelodictyon luteolum
NCBI taxonomy Id: 319225
Other names: Chlorobium luteolum DSM 273, Chlorobium luteolum str. DSM 273, Chlorobium luteolum strain DSM 273, P. luteolum DSM 273, Pelodictyon luteolum DSM 273
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