Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Plut_0226 | Plut_0261 | Plut_0226 | Plut_0261 | Competence protein. | Single-strand binding protein. | 0.401 |
Plut_0226 | Plut_0305 | Plut_0226 | Plut_0305 | Competence protein. | PAS/PAC sensor hybrid histidine kinase. | 0.506 |
Plut_0226 | Plut_1346 | Plut_0226 | Plut_1346 | Competence protein. | ComEC/Rec2-related protein. | 0.784 |
Plut_0226 | Plut_1766 | Plut_0226 | Plut_1766 | Competence protein. | SMF protein. | 0.876 |
Plut_0226 | recG | Plut_0226 | Plut_0350 | Competence protein. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.400 |
Plut_0261 | Plut_0226 | Plut_0261 | Plut_0226 | Single-strand binding protein. | Competence protein. | 0.401 |
Plut_0261 | Plut_0462 | Plut_0261 | Plut_0462 | Single-strand binding protein. | Exonuclease RecJ. | 0.506 |
Plut_0261 | Plut_1766 | Plut_0261 | Plut_1766 | Single-strand binding protein. | SMF protein. | 0.618 |
Plut_0261 | recG | Plut_0261 | Plut_0350 | Single-strand binding protein. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.558 |
Plut_0261 | topA | Plut_0261 | Plut_2073 | Single-strand binding protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.974 |
Plut_0305 | Plut_0226 | Plut_0305 | Plut_0226 | PAS/PAC sensor hybrid histidine kinase. | Competence protein. | 0.506 |
Plut_0305 | Plut_1766 | Plut_0305 | Plut_1766 | PAS/PAC sensor hybrid histidine kinase. | SMF protein. | 0.591 |
Plut_0305 | topA | Plut_0305 | Plut_2073 | PAS/PAC sensor hybrid histidine kinase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.457 |
Plut_0462 | Plut_0261 | Plut_0462 | Plut_0261 | Exonuclease RecJ. | Single-strand binding protein. | 0.506 |
Plut_0462 | Plut_1346 | Plut_0462 | Plut_1346 | Exonuclease RecJ. | ComEC/Rec2-related protein. | 0.447 |
Plut_0462 | Plut_1766 | Plut_0462 | Plut_1766 | Exonuclease RecJ. | SMF protein. | 0.625 |
Plut_0462 | recG | Plut_0462 | Plut_0350 | Exonuclease RecJ. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.450 |
Plut_0462 | topA | Plut_0462 | Plut_2073 | Exonuclease RecJ. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.619 |
Plut_0652 | Plut_1766 | Plut_0652 | Plut_1766 | Hypothetical protein; Belongs to the peptidase A24 family. | SMF protein. | 0.629 |
Plut_0792 | Plut_1766 | Plut_0792 | Plut_1766 | Type II secretory pathway prepilin signal peptidase; PulO and related peptidases-like; Belongs to the peptidase A24 family. | SMF protein. | 0.629 |
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