STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDLipoprotein ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family. (221 aa)    
Predicted Functional Partners:
ARN72503.1
Transmembrane permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.963
ARN71058.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.961
ARN71894.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.960
ARN72058.1
Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.958
ARN72059.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.957
ARN72139.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.951
ARN71857.1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  
 0.902
ARN71258.1
TIGR02757 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.819
ARN71256.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.719
ARN72310.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.657
Your Current Organism:
Nonlabens sediminis
NCBI taxonomy Id: 319236
Other names: Flavobacteriaceae bacterium JCM 19294, LMG 23247, LMG:23247, N. sediminis, NBRC 100970, Nonlabens sediminis (Khan et al. 2006) Yi and Chun 2012, Sandarakinotalea sediminis, Sandarakinotalea sediminis Khan et al. 2006, strain CKA-5
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