STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARN71443.1Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)    
Predicted Functional Partners:
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.840
ARN71441.1
Gliding motility protein GldL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.831
ARN71439.1
Gliding motility protein GldN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.696
ARN70326.1
S-adenosyl-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
ARN71442.1
Gliding motility lipoprotein GldK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.692
ARN71459.1
ZIP family metal transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
hutI
Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.620
ARN71687.1
Cell division protein ZapA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
ARN70949.1
acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.591
ARN71440.1
Gliding motility protein GldM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.588
Your Current Organism:
Nonlabens sediminis
NCBI taxonomy Id: 319236
Other names: Flavobacteriaceae bacterium JCM 19294, LMG 23247, LMG:23247, N. sediminis, NBRC 100970, Nonlabens sediminis (Khan et al. 2006) Yi and Chun 2012, Sandarakinotalea sediminis, Sandarakinotalea sediminis Khan et al. 2006, strain CKA-5
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