STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARN72594.1DUF4856 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)    
Predicted Functional Partners:
ARN71602.1
Peptidase M75 superfamily protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.913
ARN71604.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.881
ARN71603.1
HTTM domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.867
ARN71456.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
ARN71014.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.513
BST91_03610
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.492
ARN70631.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.466
ARN72565.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
ARN71358.1
Rhodopsin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.436
ARN70632.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.435
Your Current Organism:
Nonlabens sediminis
NCBI taxonomy Id: 319236
Other names: Flavobacteriaceae bacterium JCM 19294, LMG 23247, LMG:23247, N. sediminis, NBRC 100970, Nonlabens sediminis (Khan et al. 2006) Yi and Chun 2012, Sandarakinotalea sediminis, Sandarakinotalea sediminis Khan et al. 2006, strain CKA-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.