STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARN71795.1TIGR03643 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)    
Predicted Functional Partners:
ARN71607.1
Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.706
ARN71796.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.554
ARN71797.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.554
ARN71610.1
Cryptochrome/photolyase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.499
ARN70693.1
Deoxyribodipyrimidine photolyase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA photolyase family.
 
     0.449
ARN71798.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
ARN70593.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.421
ARN71358.1
Rhodopsin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
ARN71608.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.408
Your Current Organism:
Nonlabens sediminis
NCBI taxonomy Id: 319236
Other names: Flavobacteriaceae bacterium JCM 19294, LMG 23247, LMG:23247, N. sediminis, NBRC 100970, Nonlabens sediminis (Khan et al. 2006) Yi and Chun 2012, Sandarakinotalea sediminis, Sandarakinotalea sediminis Khan et al. 2006, strain CKA-5
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.