STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARN71831.1Sodium:alanine symporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (694 aa)    
Predicted Functional Partners:
ARN71830.1
Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.802
ARN71829.1
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.708
ARN71833.1
PspC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.617
ARN71832.1
Potassium channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.615
ARN71834.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.555
ARN71047.1
Dicarboxylate/amino acid:cation symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
  
 0.549
rpsU
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.
       0.509
ARN70557.1
Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.439
ARN71835.1
Cystathionine beta-synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.401
Your Current Organism:
Nonlabens sediminis
NCBI taxonomy Id: 319236
Other names: Flavobacteriaceae bacterium JCM 19294, LMG 23247, LMG:23247, N. sediminis, NBRC 100970, Nonlabens sediminis (Khan et al. 2006) Yi and Chun 2012, Sandarakinotalea sediminis, Sandarakinotalea sediminis Khan et al. 2006, strain CKA-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.