STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARN72013.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)    
Predicted Functional Partners:
ARN72609.1
G-D-S-L family lipolytic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.950
ARN71077.1
Chalcone isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.665
BST91_00045
Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.652
ARN72366.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.632
ARN72014.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.586
pdxJ
Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
       0.542
ARN72608.1
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.538
ARN70758.1
Nucleoid-associated protein NdpA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.474
ARN72046.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.471
ARN72630.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
Your Current Organism:
Nonlabens sediminis
NCBI taxonomy Id: 319236
Other names: Flavobacteriaceae bacterium JCM 19294, LMG 23247, LMG:23247, N. sediminis, NBRC 100970, Nonlabens sediminis (Khan et al. 2006) Yi and Chun 2012, Sandarakinotalea sediminis, Sandarakinotalea sediminis Khan et al. 2006, strain CKA-5
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.