STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANN16281.1LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (971 aa)    
Predicted Functional Partners:
SD37_22285
Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.650
ANN16282.1
G-D-S-L family lipolytic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.538
ANN22210.1
Peptidase M15; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.508
ANN15948.1
SARP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.503
ANN15863.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.496
ANN19688.1
Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.450
ANN18720.1
SARP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.436
ANN18898.1
PAS sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.420
ANN15921.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.410
ANN17887.1
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
Your Current Organism:
Amycolatopsis orientalis
NCBI taxonomy Id: 31958
Other names: A. orientalis, ATCC 19795, Actinoplanes sp. ATCC 53771, Amycolatopsis orientalis orientalis, Amycolatopsis orientalis subsp. orientalis, CIP 107113, DSM 40040, IFO 12806, IMSNU 20058, ISP 5040, JCM 4235, JCM 4600, KCTC 9412, NBRC 12806, NRRL 2450, Nocardia orientalis, Streptomyces orientalis, UNIQEM 181, VKM Ac-866
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