STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknASerine/threonine kinase. (632 aa)    
Predicted Functional Partners:
CMS0021
Putative protein phosphatase.
 
 0.969
CMS0020
Putative FtsW/RodA/SpoVE family cell cycle protein; Belongs to the SEDS family.
 
 
 0.899
CMS1347
Conserved hypothetical protein.
 
 
 
 0.873
CMS0019
Putative secreted penicillin-binding protein.
     
 0.870
CMS0022
Putative secreted protein.
 
 
 
 0.858
CMS0023
Conserved hypothetical protein.
 
 
 
 0.856
CMS1917
Putative protein phosphatase.
 
 
 0.850
CMS2053
Hypothetical protein.
 
 
 0.850
CMS0017
Putative serine/threonine protein kinase.
 
 
0.813
CMS1359
Putative eukaryotic-type serine/threonine protein kinase.
 
 
0.576
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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