STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0019Putative secreted penicillin-binding protein. (483 aa)    
Predicted Functional Partners:
CMS0020
Putative FtsW/RodA/SpoVE family cell cycle protein; Belongs to the SEDS family.
 
 0.998
ftsW
Putative cell division protein FtsW; Belongs to the SEDS family.
 
 0.974
CMS1367
Penicillin binding protein.
  
  
0.946
CMS1952
Putative carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.940
CMS0191
Putative secreted peptidase.
     
 0.927
CMS1166
Putative carboxypeptidase.
     
 0.927
pknA
Serine/threonine kinase.
     
 0.870
CMS0023
Conserved hypothetical protein.
 
   
 0.853
CMS0022
Putative secreted protein.
 
   
 0.845
ftsQ
Cell division protein FtsQ; Essential cell division protein.
  
 
 0.832
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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