STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0019Putative secreted penicillin-binding protein. (483 aa)    
Predicted Functional Partners:
CMS0020
Putative FtsW/RodA/SpoVE family cell cycle protein; Belongs to the SEDS family.
 
 0.998
ftsW
Putative cell division protein FtsW; Belongs to the SEDS family.
 
 0.975
CMS1367
Penicillin binding protein.
  
  
0.942
ftsQ
Cell division protein FtsQ; Essential cell division protein.
  
 
 0.901
CMS0022
Putative secreted protein.
 
   
 0.900
pknA
Serine/threonine kinase.
  
  
 0.889
CMS0023
Conserved hypothetical protein.
 
   
 0.877
CMS0021
Putative protein phosphatase.
  
 0.819
crgA
Putative integral membrane protein; Involved in cell division; Belongs to the CrgA family.
   
 
 0.803
CMS0178
Putative penicillin-binding protein/transpeptidase.
 
 
 
 0.795
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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