Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
CMS0027Putative two-component system sensor kinase. (386 aa)    
Predicted Functional Partners:
CMS0026
Putative two-component system response regulator.
 
   0.944
CMS2124
Putative two-component response regulator.
  
   0.787
CMS0957
Putative two-component system response regulator.
  
   0.779
CMS1944
Putative two-component system response regulator.
  
   0.772
CMS1730
Putative two component system response regulator.
  
   0.765
CMS2283
Putative two component system response regulator.
  
   0.754
CMS0501
Putative two-component system response regulator.
  
   0.753
CMS1167
Putative two-component response regulator.
  
   0.752
CMS0339
Putative two-component system response regulator.
  
   0.730
CMS0473
Putative two component response regulator.
  
   0.720
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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