STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pipPutative prolyl aminopeptidase. (435 aa)    
Predicted Functional Partners:
CMS0058
Putative extracellular solute-binding protein.
 
     0.912
rnhA
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
      0.898
CMS0064
Putative Xaa-Pro aminopeptidase II.
 
 
 
 0.827
CMS0065
Putative GntR-family transcriptional regulator and oxidoreductase fusion protein; Contains an N terminal GntR region and a C terminal FAD-dependent oxidoreductase.
 
 
   0.819
CMS0060
Oligopeptide transport system integral membrane protein.
 
     0.816
CMS0059
Oligopeptide transport integral membrane protein.
 
     0.809
CMS0061
Putative ABC transporter ATP-binding subunit; Belongs to the ABC transporter superfamily.
       0.773
CMS0062
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.773
CMS0066
Putative secreted oxidase.
 
     0.602
CMS0067
Putative dihydropicolinate synthase; Belongs to the DapA family.
 
     0.602
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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