STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CMS0132Putative aldolase. (236 aa)    
Predicted Functional Partners:
araB
Ribulokinase.
 
 
 0.995
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 0.985
xylB
Xylulose kinase.
  
 
 0.949
rpe
PS00454 FKBP-type peptidyl-prolyl cis-trans isomerase signature 2; Belongs to the ribulose-phosphate 3-epimerase family.
   
 
 0.913
fruA
PTS system fructose-specific EIIBC component.
  
  
 0.634
CMS0134
Putative extracellular sugar-binding protein.
  
  
 0.593
CMS0130
Putative LacI-family transcriptional regulator.
 
   
 0.530
licR
Putative PTS system antitermination regulator.
  
  
 0.460
CMS0135
Putative sugar-transport ATP binding protein.
  
  
 0.427
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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