STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (505 aa)    
Predicted Functional Partners:
araB
Ribulokinase.
 
 0.999
CMS0132
Putative aldolase.
 
 0.997
CMS1691
Putative xylosidase/arabinosidase; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.894
abfA-2
Conserved hypothetical protein (pseudogene); F.
 
 
 0.854
abfA
alpha-L-arabinofuranosidase; alpha-N-arabinofuranosidase (arabinosidase).
 
 
 0.852
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
  
   
 0.816
CMS1943
Conserved hypothetical protein.
     
  0.800
CMS2350
Conserved hypothetical protein.
     
  0.800
fruA
PTS system fructose-specific EIIBC component.
   
  
 0.725
CMS0134
Putative extracellular sugar-binding protein.
 
     0.650
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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