STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CMS0146Conserved hypothetical protein. (363 aa)    
Predicted Functional Partners:
CMS1307
Conserved hypothetical protein.
  
 
 0.858
CMS2293
NifU-like protein.
  
 
 0.858
CMS1972
Putative ABC transporter ATP-binding subunit.
  
  
 0.780
CMS1975
Conserved hypothetical protein.
  
 
 0.678
CMS1974
Conserved hypothetical protein.
  
 
 0.676
CMS1650
Conserved hypothetical protein.
  
 
 0.637
CMS0145
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.624
CMS0147
Putative membrane transport protein.
       0.545
CMS1318
Putative oxidoreductase.
  
  
 0.500
CMS2698
Putative ATP-binding protein.
  
    0.419
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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