STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0191Putative secreted peptidase. (453 aa)    
Predicted Functional Partners:
CMS1952
Putative carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.933
CMS1166
Putative carboxypeptidase.
  
  
 
0.911
CMS0234
Putative large membrane associated protein.
  
     0.750
CMS0192
Putative nicotinamidase/pyrazinamidase.
       0.620
CMS0642A
Putative exopolysaccharide production protein; Tandem duplication suggested by similarity to upstream CDS.
  
     0.574
CMS2761
Conserved hypothetical protein.
  
     0.568
CMS0642B
Putative exopolysaccharide production protein; Tandem duplication suggested by similarity to downstream CDS.
  
     0.526
CMS0616
Putative integral membrane protein.
  
    0.524
CMS0424
Conserved hypothetical protein.
  
     0.511
CMS2060
Putative two-component system sensor kinase.
  
    0.499
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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