STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0191Putative secreted peptidase. (453 aa)    
Predicted Functional Partners:
CMS0019
Putative secreted penicillin-binding protein.
     
 0.927
CMS1952
Putative carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.926
CMS1367
Penicillin binding protein.
     
 0.923
CMS1166
Putative carboxypeptidase.
  
  
 
0.911
CMS0234
Putative large membrane associated protein.
  
     0.750
CMS0192
Putative nicotinamidase/pyrazinamidase.
       0.603
CMS0642A
Putative exopolysaccharide production protein; Tandem duplication suggested by similarity to upstream CDS.
  
     0.574
CMS2761
Conserved hypothetical protein.
  
     0.568
CMS0642B
Putative exopolysaccharide production protein; Tandem duplication suggested by similarity to downstream CDS.
  
     0.526
CMS0616
Putative integral membrane protein.
  
     0.516
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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