STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0196Putative ABC transporter. (643 aa)    
Predicted Functional Partners:
CMS1225
Putative glutamate/aspartate uptake system ATP-binding protein.
 
     
0.900
pstB
Putative insertion element IS1121 transposase (pseudogene); Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.898
CMS0062
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
     
0.897
CMS2081
Putative ABC-transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
   
0.872
CMS0197
Putative ABC transporter ATP-binding component.
 
0.589
CMS0044
Putative integral membrane protein.
  
     0.587
CMS1193
Putative phosphoglycerate mutase.
  
     0.560
CMS0600
Putative acetyltransferase.
  
     0.524
CMS2749
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.519
CMS1487
Putative integral membrane protein.
  
     0.507
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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