STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0335Putative ABC-transport protein, ATP-binding component. (310 aa)    
Predicted Functional Partners:
CMS0336
Possible binding-protein-dependent transport lipoprotein.
 0.995
CMS0337
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 0.994
CMS3065
Putative iron-siderophore uptake system transmembrane component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.926
CMS1571
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.910
CMS0929
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.895
CMS3064
Putative iron-siderophore uptake system transmembrane component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 0.848
CMS3066
Putative iron-siderophore binding lipoprotein.
 
 
 0.772
CMS0334
Hypothetical protein.
  
    0.678
CMS1449
Putative siderophore-interacting protein.
 
  
 0.651
CMS1573
Putative substrate-binding transport protein.
 
 
 0.630
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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