STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0337Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (718 aa)    
Predicted Functional Partners:
CMS0335
Putative ABC-transport protein, ATP-binding component.
 0.994
CMS0336
Possible binding-protein-dependent transport lipoprotein.
 
 0.993
CMS1572
Putative ATP-binding ABC transport protein.
 
 0.873
CMS3063
Putative iron-siderophore uptake system ATP-binding component.
 
 0.861
CMS0930
Fe uptake system permease.
 
 0.845
CMS1573
Putative substrate-binding transport protein.
 
 
 0.728
CMS0334
Hypothetical protein.
       0.640
CMS3066
Putative iron-siderophore binding lipoprotein.
 
 
 0.601
CMS0928
Putative substrate-binding transport protein.
 
 
 0.563
CMS0333
Putative hydrolase.
 
     0.450
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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