STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0359Conserved hypothetical protein. (310 aa)    
Predicted Functional Partners:
CMS0360
Putative TetR-family transcriptional regulator.
  
    0.534
CMS2439
Putative integral membrane protein.
  
     0.527
CMS0044
Putative integral membrane protein.
  
     0.515
CMS1954
Putative NAD-dependent deacetylase.
   
    0.511
CMS1361
Putative DNA-binding protein.
   
    0.508
CMS1859
Putative integral membrane protein.
 
     0.442
CMS1290
Putative two-component system response regulator (pseudogene); HMMPfam hit to PF00072, Response regulator receiver, score 8.1e-35.
 
     0.432
CMS0483
Putative non-ribosomal peptide synthetase (pseudogene); PS00455 Putative AMP-binding domain signature.
   
    0.416
CMS2640
Conserved hypothetical protein.
   
    0.412
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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