STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0420Conserved hypothetical protein. (262 aa)    
Predicted Functional Partners:
CMS0419
Putative secreted oxidoreductase.
       0.645
CMS0418
Conserved hypothetical protein.
       0.631
CMS0421
Putative insertion element ISCmi2 transposase; Nu/R.
       0.559
CMS0417
Putative bacteriophage protein.
       0.516
CMS3018
Putative membrane protein.
  
    0.502
CMS0416
Conserved hypothetical protein.
       0.497
CMS2734
Conserved hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.467
CMS1455
Putative arginase; Belongs to the arginase family.
  
  
 0.452
CMS1627
Conserved hypothetical protein.
  
     0.419
CMS0508
Putative monooxygenase (pseudogene); N.
  
     0.411
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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