STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0420Conserved hypothetical protein. (262 aa)    
Predicted Functional Partners:
CMS0419
Putative secreted oxidoreductase.
       0.647
CMS0418
Conserved hypothetical protein.
   
   0.636
CMS0421
Putative insertion element ISCmi2 transposase; Nu/R.
       0.559
CMS3018
Putative membrane protein.
  
    0.529
CMS0417
Putative bacteriophage protein.
       0.513
CMS0416
Conserved hypothetical protein.
       0.497
CMS1455
Putative arginase; Belongs to the arginase family.
  
  
 0.486
CMS2734
Conserved hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
  
     0.467
CMS0242
Putative integral membrane protein; Contains possible coiled-coil region.
  
    0.443
CMS1627
Conserved hypothetical protein.
  
     0.419
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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