STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0539Putative integral membrane protein. (180 aa)    
Predicted Functional Partners:
CMS0538
Putative membrane protein; Hydrophobicity profile typical of sortase-sorted surface proteins but no LPXTG motif or similar.
 
     0.898
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.838
CMS0536
Conserved hypothetical protein.
       0.773
CMS0537
Putative integral membrane transport protein.
       0.773
CMS0535
Putative inosine-5'-monophosphate dehydrogenase.
     
 0.636
qcrA
Ubiquinol-cytochrome C reductase iron-sulfur subunit (rieske iron-sulfur protein).
  
     0.620
CMS1392
Putative integral membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
     0.604
CMS1620
Putative integral membrane protein.
  
     0.594
qcrC
Ubiquinol-cytochrome c reductase cytochrome c subunit.
  
     0.589
CMS2291
Putative sortase-sorted copper resistance surface protein; C-terminal extension relative to homologues.
   
    0.573
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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