STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0642BPutative exopolysaccharide production protein; Tandem duplication suggested by similarity to downstream CDS. (484 aa)    
Predicted Functional Partners:
CMS0080
Putative glycosyl transferase.
  
  
 0.780
CMS1590
Putative initial glycosyl transferase; Responsible for linkage of the initial sugar to the lipid carrier in surface polysaccharide biosynthesis.
  
  
 0.780
CMS0642A
Putative exopolysaccharide production protein; Tandem duplication suggested by similarity to upstream CDS.
 
    
0.774
CMS3101
Putative sortase-sorted surface-anchored protein.
  
     0.717
CMS2761
Conserved hypothetical protein.
  
     0.679
CMS0641
Putative exported protein.
  
     0.666
CMS0616
Putative integral membrane protein.
  
     0.615
CMS0600
Putative acetyltransferase.
  
    0.590
CMS0044
Putative integral membrane protein.
  
     0.586
CMS0417
Putative bacteriophage protein.
  
     0.575
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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