Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CMS0642CPutative acyl-CoA dehydrogenase. (392 aa)    
Predicted Functional Partners:
fadB
Fatty acid oxidation complex alpha-subunit.
 
 0.987
fadA
3-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.986
CMS0070
Putative acyl CoA oxidase.
  
  
  0.919
CMS1454
Putative enoyl-CoA hydratase.
 
 0.913
pdhD
Dihydrolipoamide dehydrogenase.
   
 
 0.911
CMS1354
Putative long chain fatty acid CoA ligase.
 
 0.653
CMS0642B
Putative exopolysaccharide production protein; Tandem duplication suggested by similarity to downstream CDS.
       0.550
fadD
long-chain-fatty-acid--CoA ligase.
  
 
 0.541
CMS1081
long-chain-fatty-acid--CoA ligase.
  
 
 0.541
manA
Mannose-6-phosphate isomerase.
       0.522
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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