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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0666Putative integral membrane protein. (228 aa)    
Predicted Functional Partners:
CMS0665
Putative secreted protein.
 
     0.960
CMS0667
Putative integral membrane protein.
 
     0.960
CMS0662
Putative secreted protein.
 
  
 0.850
CMS0664
Putative insertion element IS1121 transposase (pseudogene); Predicted helix-turn-helix motif with score 1638.000, SD 4.77 at aa 39-60, sequence RPVSHVARELGVSRQCAHRWVA.
 
     0.845
CMS0656
Putative integral membrane protein.
 
    0.783
CMS0670
Conserved hypothetical protein.
 
     0.642
CMS0669
Putative two-component sensor kinase.
       0.609
CMS3101
Putative sortase-sorted surface-anchored protein.
 
    0.555
CMS0538
Putative membrane protein; Hydrophobicity profile typical of sortase-sorted surface proteins but no LPXTG motif or similar.
  
     0.553
CMS0668
Putative two-component system response regulator.
  
    0.543
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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