Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CMS0682 | CMS0784 | CMS0682 | CMS0784 | Putative peroxidase. | Putative thioredoxin. | 0.422 |
CMS0783 | CMS0784 | CMS0783 | CMS0784 | Putative membrane protein. | Putative thioredoxin. | 0.600 |
CMS0784 | CMS0682 | CMS0784 | CMS0682 | Putative thioredoxin. | Putative peroxidase. | 0.422 |
CMS0784 | CMS0783 | CMS0784 | CMS0783 | Putative thioredoxin. | Putative membrane protein. | 0.600 |
CMS0784 | CMS0884 | CMS0784 | CMS0884 | Putative thioredoxin. | Putative oxidoreductase. | 0.593 |
CMS0784 | CMS1429 | CMS0784 | CMS1429 | Putative thioredoxin. | Putative pyridine nucleotide-disulfide oxidoreductase. | 0.593 |
CMS0784 | CMS2006 | CMS0784 | CMS2006 | Putative thioredoxin. | Putative glutamate synthase alpha subunit. | 0.509 |
CMS0784 | atpA | CMS0784 | CMS1926 | Putative thioredoxin. | ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.427 |
CMS0784 | fusA | CMS0784 | CMS0279 | Putative thioredoxin. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.597 |
CMS0784 | gap | CMS0784 | CMS1988 | Putative thioredoxin. | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.526 |
CMS0784 | groL2 | CMS0784 | CMS2756 | Putative thioredoxin. | 60 kDa chaperonin 2; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. | 0.484 |
CMS0784 | trxB | CMS0784 | CMS3103 | Putative thioredoxin. | Thioredoxin reductase (NADPH). | 0.815 |
CMS0884 | CMS0784 | CMS0884 | CMS0784 | Putative oxidoreductase. | Putative thioredoxin. | 0.593 |
CMS1429 | CMS0784 | CMS1429 | CMS0784 | Putative pyridine nucleotide-disulfide oxidoreductase. | Putative thioredoxin. | 0.593 |
CMS2006 | CMS0784 | CMS2006 | CMS0784 | Putative glutamate synthase alpha subunit. | Putative thioredoxin. | 0.509 |
CMS2006 | fusA | CMS2006 | CMS0279 | Putative glutamate synthase alpha subunit. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.842 |
atpA | CMS0784 | CMS1926 | CMS0784 | ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Putative thioredoxin. | 0.427 |
atpA | fusA | CMS1926 | CMS0279 | ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.934 |
atpA | gap | CMS1926 | CMS1988 | ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.478 |
fusA | CMS0784 | CMS0279 | CMS0784 | Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | Putative thioredoxin. | 0.597 |
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