STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0857Putative oxidoreductase. (327 aa)    
Predicted Functional Partners:
CMS1330
Putative oxidoreductase.
 
   0.666
CMS1790
Conserved hypothetical protein (pseudogene); HMMPfam hit to PF04264, YceI, score 2.7e-70.
 
   0.655
CMS0391
Putative dehydrogenase.
 
   0.639
CMS2627
Putative zinc-binding oxidoreductase.
 
   0.551
CMS0856
Putative DeoR-family transcriptional regulator.
       0.528
CMS0509
Putative quinone oxidoreductase.
 
   0.512
CMS1300
Putative oxidoreductase.
 
   0.510
CMS0858
Putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.498
CMS0859
Putative membrane protein.
       0.494
CMS0860
Putative DNA-binding protein.
       0.417
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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