STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rafAHypothetical protein (pseudogene); N. (727 aa)    
Predicted Functional Partners:
CMS2571
Beta-galactosidase.
 
  
 0.971
lacZ1
Putative beta-galatosidase.
 
 
 0.951
lacZ2
Beta-galactosidase.
 
 
 0.950
CMS2611
Alpha-glucosidase.
 
 
 0.947
CMS1705
Putative glycosyl hydrolase; Belongs to the glycosyl hydrolase 2 family.
 
 
 0.922
CMS0579
Putative epimerase.
  
 
 0.911
bga
Beta-galactosidase.
    
 0.911
CMS2827
Putative aldose epimerase.
  
 
 0.911
CMS0938
Hypothetical protein.
    
 0.909
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
 0.900
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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