STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0912PTS transport system component IIA. (176 aa)    
Predicted Functional Partners:
CMS0913
Putative PTS transport system EIIIc component/glucosamine-6-phosphate deaminase fusion protein.
  
 0.987
ptsH
Putative phosphocarrier protein HPr component (histidine-containing protein).
 
 0.963
ptsH-2
Phosphocarrier protein Hpr.
 
 0.960
CMS0917
Putative glucosidase.
 
  
 0.942
pgi
Glucose-6-phosphate isomerase.
    
 0.925
CMS1355
Putative ROK-family regulator.
  
 
 0.908
ppgK
Polyphosphate glucokinase.
  
 
 0.908
CMS1830
Putative sugar kinase.
  
 
 0.908
CMS3089
Putative glucokinase.
  
 
 0.908
pgm
Phosphoglucomutase.
    
 0.907
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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