STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CMS0920Putative extracellular solute-binding transport protein. (428 aa)    
Predicted Functional Partners:
CMS0921
Putative integral membrane transport protein.
 
  0.995
CMS0922
Putative integral membrane transport protein.
 
  0.972
CMS3039
Putative sugar transport integral membrane protein.
 
  0.957
CMS3038
Putative sugar transport integral membrane protein.
  
  0.951
CMS2749
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.926
CMS3040
Putative sugar-binding transport lipoprotein.
  
  
 
0.924
CMS1113
Putative integral membrane transport protein.
  
   0.603
CMS0869
Putative integral membrane transport protein.
  
 
 0.599
CMS1114
Putative integral membrane transport protein.
 
   0.569
CMS0919
Putative carbohydrate kinase.
  
    0.561
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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