STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0928Putative substrate-binding transport protein. (337 aa)    
Predicted Functional Partners:
CMS0930
Fe uptake system permease.
 
 
 0.939
CMS0929
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.934
CMS1572
Putative ATP-binding ABC transport protein.
 
 0.792
CMS1571
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.620
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.577
CMS0927
Putative integral membrane protein.
       0.464
CMS0335
Putative ABC-transport protein, ATP-binding component.
  
 
 0.447
CMS3063
Putative iron-siderophore uptake system ATP-binding component.
  
 
 0.447
CMS0337
Putative integral membrane transport protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.439
CMS3065
Putative iron-siderophore uptake system transmembrane component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
 
 0.406
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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