STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0935Putative substrate-binding transport protein. (432 aa)    
Predicted Functional Partners:
CMS0936
Putative integral membrane transport protein.
 
   0.926
CMS0937
Putative integral membrane transport protein.
 
   0.898
CMS0938
Hypothetical protein.
 
     0.851
CMS2749
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.649
CMS0869
Putative integral membrane transport protein.
  
 
 0.599
CMS0934
Putative insertion element ISCmi2 transposase; Nu.
       0.495
CMS2294
Conserved hypothetical protein.
  
     0.456
CMS0365
Putative integral membrane transport protein.
  
 
 0.442
CMS0373
Putative integral membrane transport protein.
  
 
 0.442
CMS0839
Putative integral membrane transport protein.
  
 
 0.442
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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