STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS0952Putative oxidoreductase. (258 aa)    
Predicted Functional Partners:
CMS1466
Putative short-chain oxidoreductase.
  
    0.718
CMS0951
Putative oxidoreductase.
 
   
0.685
CMS0950
Conserved hypothetical protein.
       0.558
CMS0874
Putative short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.554
CMS1683
Putative oxidoreductase.
  
    0.512
CMS0968
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.479
CMS2632
Hypothetical protein.
  
    0.443
CMS0736
Putative short chain oxidoreductase.
  
    0.436
dkgA
Putative 2,5-diketo-d-gluconic acid reductase (pseudogene); HMMPfam hit to PF00248, Aldo/keto reductase, score 1.3e-106.
 
 
    0.408
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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