STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CMS1013Putative integral membrane transport protein. (276 aa)    
Predicted Functional Partners:
CMS1014
Putative integral membrane transport protein.
   0.940
CMS1015
Putative extracellular solute-binding protein.
 
 
 0.928
CMS2749
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.836
CMS0838
Putative integral membrane transport protein.
   0.822
CMS0364
Putative integral membrane transport protein.
   0.791
CMS2352
Putative inregral membrane transport.
 
 
 0.786
CMS0869
Putative integral membrane transport protein.
 
 0.767
CMS0052
Putative integral membrane binding-protein-dependent transport protein.
 
 
 0.722
CMS0374
Putative integral membrane transport protein.
 
   0.688
CMS1114
Putative integral membrane transport protein.
  
   0.658
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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