Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CMS1016Putative ROK-family transcriptional regulator. (444 aa)    
Predicted Functional Partners:
CMS1015
Putative extracellular solute-binding protein.
 
    0.734
CMS1014
Putative integral membrane transport protein.
 
     0.638
CMS1013
Putative integral membrane transport protein.
 
     0.564
CMS1017
Conserved hypothetical protein.
       0.543
RS00183
Hypothetical protein.
       0.543
CMS3089
Putative glucokinase.
  
   
 0.501
CMS1012
Putative insertion element IS1121 transposase (pseudogene); Predicted helix-turn-helix motif with score 1638.000, SD 4.77 at aa 39-60, sequence RPVSHVARELGVSRQCAHRWVA.
 
    0.462
ppgK
Polyphosphate glucokinase.
  
   
 0.432
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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