STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadDlong-chain-fatty-acid--CoA ligase. (565 aa)    
Predicted Functional Partners:
CMS1354
Putative long chain fatty acid CoA ligase.
 
 
0.845
dkgA
Putative 2,5-diketo-d-gluconic acid reductase (pseudogene); HMMPfam hit to PF00248, Aldo/keto reductase, score 1.3e-106.
  
  
 
0.842
CMS1081
long-chain-fatty-acid--CoA ligase.
  
  
 
0.804
fadB
Fatty acid oxidation complex alpha-subunit.
  
 
 0.719
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.622
CMS1060
Conserved hypothetical protein.
   
   0.607
CMS0070
Putative acyl CoA oxidase.
  
 
 0.583
CMS0642C
Putative acyl-CoA dehydrogenase.
 
 
 0.583
CMS0377
Putative dehydrogenase.
  
 
 0.575
CMS1282
Putative dioxygenase.
  
 
 0.575
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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