STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMS1066Hypothetical protein. (385 aa)    
Predicted Functional Partners:
CMS2072
Putative inosine monophosphate dehydrogenase (pseudogene); HMMPfam hit to PF00478, IMP dehydrogenase/GMP reductase, score 1.8e-117.
    
 
 0.999
CMS0017
Putative serine/threonine protein kinase.
   
 
 0.943
CMS1359
Putative eukaryotic-type serine/threonine protein kinase.
   
 
 0.943
CMS1065
Putative membrane protein.
  
    0.804
CMS1062
Matches C-terminus of several hypothetical proteins.
       0.791
CMS1063
Hypothetical protein.
       0.773
CMS1064
Putative integral membrane protein.
       0.773
CMS1067
Conserved hypothetical protein; Belongs to the WXG100 family.
  
    0.522
CMS1069
Hypothetical protein.
       0.501
CMS0178
Putative penicillin-binding protein/transpeptidase.
   
 
 0.488
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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