Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CMS1120Putative integral membrane efflux protein. (402 aa)    
Predicted Functional Partners:
CMS0200
Putative transport protein, Major Facilitator Superfamily; Overlap with downstream CDS possibly due to mutation leading to late stop.
  
     0.748
CMS1119
Putative exported protein.
 
     0.709
CMS0236
Putative integral membrane efflux protein.
  
     0.606
CMS0235
Putative integral membrane efflux protein.
  
     0.574
CMS1118
Putative membrane protein.
       0.536
CMS1126
Putative integral membrane tranport protein.
  
     0.535
CMS2212
Putative solute-binding transport protein; Similar to CMS2218.
  
     0.509
CMS0690
Putative integral membrane transport protein.
  
     0.474
CMS0590
Putative integral membrane transport protein; GC Frameplot suggests that an earlier stop codon has been lost.
  
     0.453
CMS1751
Putative sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.409
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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