Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CMS1367 | CMS1630 | CMS1367 | CMS1630 | Penicillin binding protein. | Putative ligase. | 0.478 |
CMS1367 | ftsQ | CMS1367 | CMS1375 | Penicillin binding protein. | Cell division protein FtsQ; Essential cell division protein. | 0.940 |
CMS1367 | ftsW | CMS1367 | CMS1372 | Penicillin binding protein. | Putative cell division protein FtsW; Belongs to the SEDS family. | 0.994 |
CMS1367 | ftsZ | CMS1367 | CMS1376 | Penicillin binding protein. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.803 |
CMS1367 | mraY | CMS1367 | CMS1370 | Penicillin binding protein. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.984 |
CMS1367 | murC | CMS1367 | CMS1374 | Penicillin binding protein. | UDP-N-acetylmuramoyl-L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.943 |
CMS1367 | murD | CMS1367 | CMS1371 | Penicillin binding protein. | UDP-N-acetylmuramoylalanine-D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.959 |
CMS1367 | murE | CMS1367 | CMS1368 | Penicillin binding protein. | UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. | 0.970 |
CMS1367 | murF | CMS1367 | CMS1369 | Penicillin binding protein. | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.963 |
CMS1367 | murG | CMS1367 | CMS1373 | Penicillin binding protein. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.968 |
CMS1630 | CMS1367 | CMS1630 | CMS1367 | Putative ligase. | Penicillin binding protein. | 0.478 |
CMS1630 | murC | CMS1630 | CMS1374 | Putative ligase. | UDP-N-acetylmuramoyl-L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.462 |
CMS1630 | murD | CMS1630 | CMS1371 | Putative ligase. | UDP-N-acetylmuramoylalanine-D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.539 |
CMS1630 | murF | CMS1630 | CMS1369 | Putative ligase. | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.612 |
CMS1630 | murG | CMS1630 | CMS1373 | Putative ligase. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.948 |
ftsQ | CMS1367 | CMS1375 | CMS1367 | Cell division protein FtsQ; Essential cell division protein. | Penicillin binding protein. | 0.940 |
ftsQ | ftsW | CMS1375 | CMS1372 | Cell division protein FtsQ; Essential cell division protein. | Putative cell division protein FtsW; Belongs to the SEDS family. | 0.950 |
ftsQ | ftsZ | CMS1375 | CMS1376 | Cell division protein FtsQ; Essential cell division protein. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.909 |
ftsQ | mraY | CMS1375 | CMS1370 | Cell division protein FtsQ; Essential cell division protein. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.514 |
ftsQ | murC | CMS1375 | CMS1374 | Cell division protein FtsQ; Essential cell division protein. | UDP-N-acetylmuramoyl-L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.928 |
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