STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treXGlycogen debranching enzyme (pseudogene); HMMPfam hit to PF02922, Glycoside hydrolase, family 13, N-terminal, score 1.1e-29. (110 aa)    
Predicted Functional Partners:
CMS1615
Hypothetical protein.
  
     0.588
CMS1487
Putative integral membrane protein.
  
     0.526
CMS1533
Putative ATP-binding protein.
 
     0.515
CMS0111
Putative membrane protein.
  
     0.468
CMS1530
Putative integral membrane protein.
       0.426
CMS2544
Putative MarR-family transcriptional regulator.
  
     0.426
CMS1531
Putative ABC transporter ATP-binding subunit.
       0.419
CMS1532
Putative cobalt transport protein.
       0.419
CMS1674
Conserved hypothetical protein.
 
     0.419
CMS1534
Conserved hypothetical protein.
       0.414
Your Current Organism:
Clavibacter michiganensis sepedonicus
NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum
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