CMS1536 protein (Clavibacter michiganensis sepedonicus)

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CMS1536

Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. (206 aa)

Predicted Functional Partners:

CMS2361

0.632

CMS1537

0.559

whiB-2

0.551

whiB

0.519

CMS1818

0.499

rph

0.485

rpoZ

0.466

CMS1535

0.455

purF

0.434

rnc

0.424

Your Current Organism:

Clavibacter michiganensis sepedonicus

NCBI taxonomy Id: 31964
Other names: ATCC 33113, Aplanobacter sepedonicum, Bacterium sepedonicum, C. michiganensis subsp. sepedonicus, CCUG 23908, CFBP 2049, CIP 104844, Clavibacter michiganense sepedonicum, Clavibacter michiganensis sepedonicum, Clavibacter michiganensis subsp. sepedonicus, Clavibacter sepedonicus nom. illegit., Corynebacterium michiganense subsp. sepedonicum, Corynebacterium sepedonicum, DSM 20744, ICMP 2535, JCM 9667, LMG 2889, LMG:2889, Mycobacterium sepedonicum, NCPPB 2137, Phytomonas sepedonica, Pseudobacterium sepedonicum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CMS1535	CMS1536	CMS1535	CMS1536	Conserved hypothetical protein.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.455
CMS1536	CMS1535	CMS1536	CMS1535	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Conserved hypothetical protein.	0.455
CMS1536	CMS1537	CMS1536	CMS1537	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Putative integral membrane protein.	0.559
CMS1536	CMS1818	CMS1536	CMS1818	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Putative ribonuclease.	0.499
CMS1536	CMS2361	CMS1536	CMS2361	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	ATP-dependent helicase.	0.632
CMS1536	purF	CMS1536	CMS1031	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.	0.434
CMS1536	rnc	CMS1536	CMS0746	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.424
CMS1536	rph	CMS1536	CMS2100	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.485
CMS1536	rpoZ	CMS1536	CMS2026	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Putative DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.466
CMS1536	whiB	CMS1536	CMS0646	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Putative WhiB-family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.519
CMS1536	whiB-2	CMS1536	CMS0679	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	Putative WhiB-family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.551
CMS1537	CMS1536	CMS1537	CMS1536	Putative integral membrane protein.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.559
CMS1818	CMS1536	CMS1818	CMS1536	Putative ribonuclease.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.499
CMS1818	rph	CMS1818	CMS2100	Putative ribonuclease.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.451
CMS2361	CMS1536	CMS2361	CMS1536	ATP-dependent helicase.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.632
CMS2361	rnc	CMS2361	CMS0746	ATP-dependent helicase.	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.506
CMS2361	rph	CMS2361	CMS2100	ATP-dependent helicase.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.494
purF	CMS1536	CMS1031	CMS1536	Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.434
rnc	CMS1536	CMS0746	CMS1536	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides.	0.424
rnc	CMS2361	CMS0746	CMS2361	Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	ATP-dependent helicase.	0.506

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